STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
robo4Roundabout, axon guidance receptor, homolog 4 (Drosophila). (1155 aa)    
Predicted Functional Partners:
slit2
Slit homolog 2 (Drosophila).
   
 0.831
slit1
Slit homolog 1a (Drosophila).
   
 0.831
slit3
Slit homolog 3 (Drosophila).
   
 0.818
nyx
Nyctalopin.
   
 0.811
LOC102686356
Tyrosine-protein kinase.
   
 0.712
lrit3
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b.
    
 0.675
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
    
 0.662
W5MDX6_LEPOC
C-abl oncogene 1, non-receptor tyrosine kinase.
   
 0.639
LOC107078350
LRRCT domain-containing protein.
   
 0.635
LRRC70
Leucine rich repeat containing 70.
   
 0.635
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.