gfm2 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gfm2

Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. (753 aa)

Predicted Functional Partners:

mrpl27

0.976

W5MQY4_LEPOC

0.951

mrpl19

0.948

mrpl32

0.931

mrpl17

0.927

mrpl21

0.925

mrpl3

0.924

mrpl13

0.921

mrpl11

0.920

hmgn5

0.902

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5MQY4_LEPOC	gfm2	ENSLOCP00000010793	ENSLOCP00000006470	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.951
W5MQY4_LEPOC	hmgn5	ENSLOCP00000010793	ENSLOCP00000018483	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	High mobility group nucleosome binding domain 6.	0.994
W5MQY4_LEPOC	mrpl11	ENSLOCP00000010793	ENSLOCP00000000677	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.999
W5MQY4_LEPOC	mrpl13	ENSLOCP00000010793	ENSLOCP00000011230	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.998
W5MQY4_LEPOC	mrpl17	ENSLOCP00000010793	ENSLOCP00000005301	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.999
W5MQY4_LEPOC	mrpl19	ENSLOCP00000010793	ENSLOCP00000001104	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L19.	0.999
W5MQY4_LEPOC	mrpl21	ENSLOCP00000010793	ENSLOCP00000001712	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L21.	0.999
W5MQY4_LEPOC	mrpl27	ENSLOCP00000010793	ENSLOCP00000013629	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L27.	0.999
W5MQY4_LEPOC	mrpl3	ENSLOCP00000010793	ENSLOCP00000001747	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.998
W5MQY4_LEPOC	mrpl32	ENSLOCP00000010793	ENSLOCP00000011363	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
gfm2	W5MQY4_LEPOC	ENSLOCP00000006470	ENSLOCP00000010793	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.951
gfm2	hmgn5	ENSLOCP00000006470	ENSLOCP00000018483	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	High mobility group nucleosome binding domain 6.	0.902
gfm2	mrpl11	ENSLOCP00000006470	ENSLOCP00000000677	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.920
gfm2	mrpl13	ENSLOCP00000006470	ENSLOCP00000011230	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.921
gfm2	mrpl17	ENSLOCP00000006470	ENSLOCP00000005301	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.927
gfm2	mrpl19	ENSLOCP00000006470	ENSLOCP00000001104	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L19.	0.948
gfm2	mrpl21	ENSLOCP00000006470	ENSLOCP00000001712	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L21.	0.925
gfm2	mrpl27	ENSLOCP00000006470	ENSLOCP00000013629	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L27.	0.976
gfm2	mrpl3	ENSLOCP00000006470	ENSLOCP00000001747	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.924
gfm2	mrpl32	ENSLOCP00000006470	ENSLOCP00000011363	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Uncharacterized protein.	0.931

page 1 of 6

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About