STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdr16c5Short chain dehydrogenase/reductase family 16C, member 5b; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (315 aa)    
Predicted Functional Partners:
W5MH99_LEPOC
Ig-like domain-containing protein.
   
 0.849
LOC102689463
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.823
LOC102694928
Cytochrome P450, family 26, subfamily b, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.803
LOC102698541
Lecithin retinol acyltransferase b, tandem duplicate 1.
    
 0.803
W5MP28_LEPOC
Lecithin retinol acyltransferase b, tandem duplicate 1.
    
 0.801
W5N0Q7_LEPOC
Retinol saturase (all-trans-retinol 13,14-reductase).
    
 0.795
dgat1
O-acyltransferase.
     
 0.792
W5MVM7_LEPOC
PNPLA domain-containing protein.
     
 0.791
W5M5N5_LEPOC
O-acyltransferase.
     
 0.770
CD247
CD247 molecule.
   
 0.732
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.