STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102687664Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (259 aa)    
Predicted Functional Partners:
LOC102695089
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
  0.877
W5MVJ6_LEPOC
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
  0.864
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
  0.858
W5LVZ4_LEPOC
Poly [ADP-ribose] polymerase.
   
 
  0.850
W5MXT6_LEPOC
Caspase 8; Belongs to the peptidase C14A family.
    
 0.850
lmnb1
Lamin B1; Belongs to the intermediate filament family.
    
  0.849
LOC102688505
Lamin L3; Belongs to the intermediate filament family.
    
  0.849
lmnb2
Lamin B2; Belongs to the intermediate filament family.
    
  0.847
parp3
Poly [ADP-ribose] polymerase.
   
 
  0.847
CASP8
Caspase 8; Belongs to the peptidase C14A family.
    
  0.841
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.