STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MDN9_LEPOCUncharacterized protein; Belongs to the intermediate filament family. (1272 aa)    
Predicted Functional Partners:
TMEM189-UBE2V1
TMEM189-UBE2V1 readthrough.
   
 0.936
W5N075_LEPOC
BCL2 associated athanogene 3.
    
 
 0.701
rps27a
Ribosomal protein S27a.
    
  0.652
W5M7P1_LEPOC
Ubiquitin-conjugating enzyme E2W (putative).
    
 0.643
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.578
W5MVF4_LEPOC
Uncharacterized protein.
    
  0.578
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.576
runx3
Runt-related transcription factor.
    
  0.572
runx1
Runt-related transcription factor.
    
  0.572
runx2
RUNX family transcription factor 2a.
    
  0.572
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.