STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttf1Uncharacterized protein. (391 aa)    
Predicted Functional Partners:
TWISTNB
TWIST neighbor.
    
 0.747
W5N5C2_LEPOC
RNA polymerase I subunit E.
    
 0.744
polr1c
RNA polymerase I and III subunit C.
    
  0.742
W5M8I8_LEPOC
Uncharacterized protein.
     
 0.741
polr1a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.717
cavin1
Caveolae associated protein 1b.
    
 0.714
tbp
TATA box binding protein.
     
 0.711
polr1b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.688
W5NC67_LEPOC
CD3e molecule, epsilon associated protein.
    
  0.684
gtf2h5
General transcription factor IIH, polypeptide 5.
    
  0.679
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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