STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MEB7_LEPOCElongation factor RNA polymerase II. (604 aa)    
Predicted Functional Partners:
aff4
AF4/FMR2 family, member 4.
   
 0.964
eaf1
ELL associated factor 1.
    
 0.958
eaf2
ELL associated factor 2.
    
 0.943
AFF1
AF4/FMR2 family member 1.
   
 0.937
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.891
cdk9
Cyclin-dependent kinase 9 (CDC2-related kinase).
    
 0.886
ccnt2
Cyclin T2a; Belongs to the cyclin family.
    
 0.885
ccnt1
Cyclin T1; Belongs to the cyclin family.
    
 0.885
ccnk
Cyclin K; Belongs to the cyclin family.
    
 0.879
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 0.869
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.