STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPDCarboxypeptidase D. (1276 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
  0.977
sort1
Sortilin.
     
 0.645
W5NFE5_LEPOC
Insulin-like growth factor 2 receptor.
   
 
 0.640
W5MIV1_LEPOC
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
  0.638
yipf6
Protein YIPF.
   
 
  0.612
LOC102693735
Uncharacterized protein.
     
 0.596
rnd3
Rho family GTPase 3b.
    
  0.538
rnd1
Rho family GTPase 1a.
    
  0.538
pik3c2a
Phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha; Belongs to the PI3/PI4-kinase family.
   
 
  0.521
pik3c2b
Phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta; Belongs to the PI3/PI4-kinase family.
   
 
  0.521
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.