STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tshz3Teashirt zinc finger homeobox 3b. (1077 aa)    
Predicted Functional Partners:
meis2
Meis homeobox 2b.
   
 0.910
meis1
Meis homeobox 1 b.
   
 0.910
wwtr1
WW domain containing transcription regulator 1.
     
 0.823
yap1
Yes-associated protein 1.
     
 0.823
irx3
Iroquois homeobox 3a.
    
 0.598
irx5
Iroquois homeobox 5b.
    
 0.568
irx2
Iroquois homeobox 2a.
    
 0.568
LOC102692643
Iroquois homeobox 7.
    
 0.536
irx6
Iroquois homeobox 6a.
    
 0.536
mkx
Mohawk homeobox a.
    
 0.536
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.