STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ermnUncharacterized protein. (389 aa)    
Predicted Functional Partners:
ltn1
Listerin E3 ubiquitin protein ligase 1.
    
 
 0.954
rpl8
Ribosomal protein L8.
   
   0.920
mrpl2
Mitochondrial ribosomal protein L2.
   
   0.920
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
   0.911
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
   0.893
W5MB44_LEPOC
Ribosomal protein L5b.
    
   0.893
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
   0.892
W5N0S0_LEPOC
Myosin VIIA and Rab interacting protein.
   
  
 0.889
W5MCK3_LEPOC
Ribosomal protein L35.
   
   0.865
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.795
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.