STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zer1Zyg-11 related, cell cycle regulator. (773 aa)    
Predicted Functional Partners:
cul2
Cullin 2; Belongs to the cullin family.
    
 0.945
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 
 0.749
zyg11b
Si:ch1073-82l19.1.
     
0.646
appbp2
Amyloid beta precursor protein (cytoplasmic tail) binding protein 2.
     
 0.560
lrr1
Zgc:77287.
      
 0.545
W5M526_LEPOC
Zinc finger, SWIM-type containing 5.
     
  0.540
W5MGW5_LEPOC
SWIM-type domain-containing protein.
     
  0.540
ZSWIM6
Zinc finger SWIM-type containing 6.
     
  0.540
zswim8
Zinc finger, SWIM-type containing 8.
     
 0.540
pptc7
Protein phosphatase; Belongs to the PP2C family.
      
 0.532
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.