STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkp4Plakophilin 4. (1199 aa)    
Predicted Functional Partners:
mst1r
Macrophage stimulating 1 receptor b.
   
 0.846
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.846
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.837
LOC102695806
Junction plakoglobin b.
   
 0.837
cdh5
Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins.
    
 0.768
W5NFI2_LEPOC
Afadin, adherens junction formation factor a.
     
 0.743
W5M3L6_LEPOC
Catenin (cadherin-associated protein), alpha 2.
   
 0.731
W5M3Q5_LEPOC
Catenin (cadherin-associated protein), alpha 2.
   
 0.731
ctnna3
Catenin alpha 3.
   
 0.731
CTNNA3
Catenin alpha 3.
   
 0.731
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.