STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d12TBC1 domain family, member 12b. (658 aa)    
Predicted Functional Partners:
plce1
Phospholipase C, epsilon 1.
      
 0.685
ulk2
Unc-51 like autophagy activating kinase 2.
    
  0.647
ulk1
Unc-51 like autophagy activating kinase 1a.
    
  0.647
LRRTM3
Leucine rich repeat transmembrane neuronal 3.
      
 0.639
rab11b
RAB11B, member RAS oncogene family, a.
    
 0.636
rab25
RAB11a, member RAS oncogene family, like.
    
 0.636
rab11a
RAB11a, member RAS oncogene family.
    
 0.636
trappc8
Trafficking protein particle complex 8.
    
 
 0.627
W5MR01_LEPOC
RAB25, member RAS oncogene family a.
    
 0.619
rabl2b
RAB, member of RAS oncogene family-like 2.
    
 0.619
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.