STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tanc1Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1b. (1856 aa)    
Predicted Functional Partners:
ppp6c
Serine/threonine-protein phosphatase.
   
 0.691
W5M8P5_LEPOC
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
   0.640
agap1
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1.
    
   0.640
LOC102682579
ArfGAP with GTPase domain, ankyrin repeat and PH domain 3.
    
   0.640
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.588
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.588
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.577
relb
V-rel avian reticuloendotheliosis viral oncogene homolog B.
   
 0.576
W5NGW5_LEPOC
V-rel avian reticuloendotheliosis viral oncogene homolog.
   
 0.576
ift81
Intraflagellar transport 81 homolog.
    
 0.568
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.