STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MG09_LEPOCProtein YIPF. (248 aa)    
Predicted Functional Partners:
yipf6
Protein YIPF.
   
 
 0.803
yipf4
Protein YIPF.
   
 
 0.772
TVP23A
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.702
LOC102695277
Golgi apparatus membrane protein TVP23 homolog.
   
 
 0.702
yipf5
Protein YIPF.
   
 
 0.641
YIPF7
Protein YIPF.
   
 
 0.641
zranb2
Zinc finger Ran-binding domain-containing protein 2; May interfere with constitutive 5'-splice site selection. Belongs to the ZRANB2 family.
 
      0.630
W5N9P2_LEPOC
Selenoprotein S.
   
 
 0.629
SELENOS
Selenoprotein S.
   
 
 0.629
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
   
  
 0.618
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.