STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MG59_LEPOCBeta-carotene oxygenase 2b. (383 aa)    
Predicted Functional Partners:
W5M7U3_LEPOC
Retinol dehydrogenase 10b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.667
W5MVM7_LEPOC
PNPLA domain-containing protein.
     
 0.652
W5M5N5_LEPOC
O-acyltransferase.
   
 
  0.641
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
     
 0.639
myo9b
Myosin IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.619
myo9a
Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.619
W5LWP2_LEPOC
Dehydrogenase/reductase (SDR family) member 4.
     
 0.586
rars1
Arginyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.557
LOC102694797
Retinol dehydrogenase 5 (11-cis/9-cis); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.544
LOC102691553
Retinol dehydrogenase 1.
     
 0.544
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.