STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MG99_LEPOCNACHT domain-containing protein. (942 aa)    
Predicted Functional Partners:
W5MPJ7_LEPOC
Regulatory factor X, 5.
    
 0.980
W5MBF3_LEPOC
Regulatory factor X-associated ankyrin-containing protein.
   
 0.956
rfxap
Regulatory factor X-associated protein.
     
 0.937
nfya
Nuclear transcription factor Y, alpha.
     
 0.884
nfyc
Nuclear transcription factor Y, gamma.
     
 0.883
nfyb
Nuclear transcription factor Y, beta a.
     
 0.871
atf1
Activating transcription factor 1.
   
 
 0.759
CREM
cAMP responsive element modulator.
   
 
 0.750
creb1
cAMP responsive element binding protein 1b.
   
 
 0.750
LOC102698942
Signal transducer and activator of transcription.
   
 
 0.701
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.