STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nelfcdNegative elongation factor complex member C/D. (539 aa)    
Predicted Functional Partners:
W5M0U2_LEPOC
Negative elongation factor complex member B.
   
 0.998
nelfa
Negative elongation factor complex member A.
    
 0.998
LOC102683016
Negative elongation factor complex member E.
    
 0.997
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.975
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.972
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 0.970
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
  0.959
pccb
Propionyl-CoA carboxylase subunit beta.
  
 0.957
LOC102690218
Si:ch211-198n5.11.
  
 0.957
mccc2
Methylcrotonoyl-CoA carboxylase 2 (beta).
  
 0.957
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.