STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxc13Homeobox C13a. (307 aa)    
Predicted Functional Partners:
W5ME14_LEPOC
Forkhead box N1.
   
 
 0.617
lef1
Lymphoid enhancer-binding factor 1.
    
 
 0.559
rnf41
Ring finger protein 41.
      
 0.524
rab27b
RAB27B, member RAS oncogene family.
   
  
 0.462
MSX2
Msh homeobox 2.
   
  
0.434
rab9a
RAB9A, member RAS oncogene family.
      
 0.433
six2
SIX homeobox 2a.
      
 0.406
LOC102696492
Pre-B-cell leukemia homeobox 2.
    
 
 0.403
pbx3
Homeobox domain-containing protein.
    
 
 0.403
LOC102685540
Homeobox domain-containing protein.
    
 
 0.403
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.