STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr81WD repeat domain 81. (2071 aa)    
Predicted Functional Partners:
W5M6X1_LEPOC
WD repeat domain 91.
   
 
 0.971
becn1
Beclin 1, autophagy related.
    
 
 0.892
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
  
 0.723
atp6v0c
V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
     
 0.707
atp6v0b
ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.
     
 0.679
rbsn
Rabenosyn, RAB effector.
     
 0.639
dipk2a
Divergent protein kinase domain 2Aa.
   
  
 0.636
FIG4
FIG4 phosphoinositide 5-phosphatase.
   
  
 0.636
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.623
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
      
 0.614
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (22%) [HD]