STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MH05_LEPOCHomeobox C6a. (469 aa)    
Predicted Functional Partners:
hoxc5
Homeobox C5a.
   
  
0.935
hoxc4
Homeobox C4a.
  
 
0.922
hoxb7
Homeobox B7a.
   
 
0.832
hoxb6
Homeobox B6a.
   
  
0.801
hoxb5
Homeobox B5b.
   
  
0.700
panx2
Pannexin; Structural component of the gap junctions and the hemichannels; Belongs to the pannexin family.
      
 0.621
W5N1M9_LEPOC
Uncharacterized protein.
  
  
0.618
hoxd4
Homeobox D4a.
   
  
0.602
egr3
Early growth response 3.
    
 
 0.541
tbr1
T-box brain transcription factor 1a.
    
 
 0.450
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.