STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MH39_LEPOCProtocadherin-related 15b. (2202 aa)    
Predicted Functional Partners:
W5MQC6_LEPOC
Cadherin-related 23.
   
0.935
W5N1U3_LEPOC
Uncharacterized protein.
   
0.915
lhfpl5
LHFPL tetraspan subfamily member 5a.
   
 0.860
W5N888_LEPOC
LHFPL tetraspan subfamily member 4a.
   
 0.737
lhfpl3
LHFPL tetraspan subfamily member 3.
   
 0.737
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.716
LOC102695806
Junction plakoglobin b.
    
 0.710
W5M227_LEPOC
Usher syndrome 1C.
   
 
 0.692
cdh11
Cadherin 11, type 2, OB-cadherin (osteoblast); Cadherins are calcium-dependent cell adhesion proteins.
   
0.676
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
   
0.676
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.