STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM9Tripartite motif containing 9. (405 aa)    
Predicted Functional Partners:
dcc
DCC netrin 1 receptor.
   
 
 0.616
neo1
Neogenin 1b.
   
 
 0.616
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
   
 
 0.614
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.448
W5MQM0_LEPOC
Si:ch211-57n23.4.
   
 
 0.422
igdcc3
Immunoglobulin superfamily, DCC subclass, member 3.
   
 
 0.422
W5MTY5_LEPOC
F-box and WD repeat domain containing 11.
    
 0.408
W5MTZ4_LEPOC
F-box and WD repeat domain containing 11.
    
 0.408
BTRC
Beta-transducin repeat containing E3 ubiquitin protein ligase.
    
 0.408
fndc1
Fibronectin type III domain containing 1.
    
 
 0.406
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.