STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MIA5_LEPOCPeptidoglycan recognition protein 6. (470 aa)    
Predicted Functional Partners:
pigu
Phosphatidylinositol glycan anchor biosynthesis, class U.
     
 0.806
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
    
  0.641
W5MPZ5_LEPOC
Palmitoyl-protein thioesterase 2.
    
 0.641
hspa4
Heat shock protein 4b.
   
  
 0.575
mitd1
MIT, microtubule interacting and transport, domain containing 1.
      
 0.572
tmem121
Transmembrane protein 121Ab.
      
 0.566
SDS
Serine dehydratase.
   
 0.561
LOC102698451
Serine dehydratase-like.
   
 0.561
W5N5I6_LEPOC
PALP domain-containing protein.
   
 0.561
LOC102692083
Si:ch73-263o4.3.
   
 0.561
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.