STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube4bUbiquitination factor E4B, UFD2 homolog (S. cerevisiae). (1362 aa)    
Predicted Functional Partners:
W5MNK9_LEPOC
Thyroid hormone receptor interactor 12.
   
 0.995
yod1
YOD1 deubiquitinase.
    
 
 0.956
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.955
birc6
Baculoviral IAP repeat containing 6.
   
 0.954
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.922
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
  
 
 0.878
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
  
 
 0.878
faap100
Si:dkey-57h18.1.
    
 
 0.869
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.869
ubl7
Ubiquitin-like 7a (bone marrow stromal cell-derived).
   
 0.859
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.