STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atf1Activating transcription factor 1. (316 aa)    
Predicted Functional Partners:
crebbp
CREB binding protein b.
   
 0.948
W5N0P4_LEPOC
E1A binding protein p300 a.
    
 0.909
W5MZ31_LEPOC
Activating transcription factor 4b.
    
 0.891
creb3l1
cAMP responsive element binding protein 3-like 1.
    
0.858
CRTC2
CREB regulated transcription coactivator 2.
    
 0.845
crtc3
CREB regulated transcription coactivator 3.
    
 0.845
W5MGK3_LEPOC
cAMP responsive element binding protein 3-like 3a.
    
 0.809
LOC102693476
cAMP responsive element binding protein 3-like 3 like.
    
 0.809
CREB3L4
cAMP responsive element binding protein 3 like 4.
    
 0.809
W5NKI2_LEPOC
BZIP domain-containing protein.
    
 0.809
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.