STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itga1Integrin, alpha 1; Belongs to the integrin alpha chain family. (1180 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.931
LOC102688010
Integrin beta; Belongs to the integrin beta chain family.
   
 0.917
TNN
Tenascin N.
   
 0.889
tnr
Tenascin R (restrictin, janusin).
    
 0.888
W5LZU4_LEPOC
Tenascin C.
    
 0.886
LAMB3
Laminin subunit beta 3.
    
 0.884
LAMC1
Laminin subunit gamma 1.
    
 0.882
lamb1
Laminin, beta 1a.
    
 0.881
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.880
lamb2
Laminin, beta 2 (laminin S).
    
 0.877
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.