STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MIU6_LEPOCMatrix metallopeptidase 9. (658 aa)    
Predicted Functional Partners:
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.942
timp2
TIMP metallopeptidase inhibitor 2b.
   
 0.910
sdc1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.826
edn1
Endothelin 1.
     
 0.825
LOC102687462
Cytochrome b-245 light chain; Critical component of the membrane-bound oxidase of phagocytes that generates superoxide. Associates with NOX3 to form a functional NADPH oxidase constitutively generating superoxide.
     
 0.823
ncf4
Neutrophil cytosolic factor 4.
   
 
 0.806
ncf1
Neutrophil cytosolic factor 1.
   
 
 0.799
W5LZK3_LEPOC
Link domain-containing protein.
   
 0.793
vegfa
Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.
     
 0.782
hbegf
Heparin-binding EGF-like growth factor a.
    
 0.755
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.