STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clstn1Calsyntenin 1. (973 aa)    
Predicted Functional Partners:
W5M008_LEPOC
TPR_REGION domain-containing protein.
    
 
 0.651
W5MUU7_LEPOC
Kinesin light chain 1a.
    
 
 0.651
LOC102683298
Kinesin light chain 3.
    
 
 0.651
klc4
Uncharacterized protein.
    
 
 0.651
nphp3
Nephronophthisis 3.
    
 
 0.604
aplp2
Amyloid beta (A4) precursor-like protein 2.
   
 
 0.422
W5MXT3_LEPOC
Amyloid beta (A4) precursor protein b.
   
 
 0.417
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.