STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylt1Xylosyltransferase I. (938 aa)    
Predicted Functional Partners:
W5N2U6_LEPOC
Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).
     
 0.912
W5MZ48_LEPOC
Xylosyltransferase II.
  
  
 
0.858
sdc1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.806
SPHK1
Sphingosine kinase 1.
   
 
 0.583
fam20b
FAM20B glycosaminoglycan xylosylkinase.
      
 0.582
LOC102683252
Decorin; May affect the rate of fibrils formation.
    
 0.561
W5MGZ9_LEPOC
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
 
   
  0.548
sdc4
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.531
nelfa
Negative elongation factor complex member A.
    
 0.530
W5MN85_LEPOC
Brevican.
     
 0.529
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.