STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxd4Homeobox D4a. (256 aa)    
Predicted Functional Partners:
hoxd3
Homeobox D3a.
  
  
0.971
hoxb5
Homeobox B5b.
   
 
0.825
hoxb7
Homeobox B7a.
   
 
0.809
hoxc4
Homeobox C4a.
  
 
0.792
hoxb6
Homeobox B6a.
   
  
0.759
hoxc5
Homeobox C5a.
   
  
0.728
W5N1M9_LEPOC
Uncharacterized protein.
    
  
0.697
W5MH05_LEPOC
Homeobox C6a.
   
  
0.602
hoxd9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
   
 
0.571
LOC102696492
Pre-B-cell leukemia homeobox 2.
    
 0.447
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.