STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
specc1lSperm antigen with calponin homology and coiled-coil domains 1-like a. (1129 aa)    
Predicted Functional Partners:
ehbp1
EH domain binding protein 1.
   
 
0.622
W5MPS2_LEPOC
Uncharacterized protein.
    
 
0.609
W5MPT9_LEPOC
Calponin-homology (CH) domain-containing protein.
    
 
0.575
W5MJ14_LEPOC
Calponin-homology (CH) domain-containing protein.
    
 
0.573
W5N202_LEPOC
PDZ and LIM domain 7.
    
  0.545
W5N5M3_LEPOC
PDZ and LIM domain 5b.
    
  0.545
W5M762_LEPOC
Sperm antigen with calponin homology and coiled-coil domains 1.
     
 
0.540
W5MIB1_LEPOC
Smoothelin, like.
     
 
0.540
pdlim4
PDZ and LIM domain 4.
     
  0.540
W5N0N0_LEPOC
PDZ and LIM domain 1 (elfin).
     
  0.540
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.