STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPP1CCSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)    
Predicted Functional Partners:
W5NAW7_LEPOC
WD_REPEATS_REGION domain-containing protein.
    
 0.991
W5MPM7_LEPOC
Cleavage and polyadenylation specific factor 1.
    
 0.987
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.987
WDR33
WD repeat domain 33.
   
 0.984
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.984
rb1
Retinoblastoma 1.
   
 0.983
itsn2
Intersectin 2b.
    
 0.982
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.976
W5M3M3_LEPOC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
  
0.975
eif2s1
Eukaryotic translation initiation factor 2, subunit 1 alpha a.
   
 0.975
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.