STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptp4a3Protein tyrosine phosphatase 4A3b. (173 aa)    
Predicted Functional Partners:
W5M713_LEPOC
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.737
cnnm2
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.648
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
    
 
 0.648
W5NDQ7_LEPOC
Cyclin and CBS domain divalent metal cation transport mediator 4b.
    
 
 0.648
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.601
W5LXB6_LEPOC
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
   
 
  0.510
csnk2a1
Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.
     
 0.467
csnk2a2
Casein kinase 2, alpha prime polypeptide b; Belongs to the protein kinase superfamily.
     
 0.467
LOC102684075
Casein kinase 2, alpha 1 polypeptide; Belongs to the protein kinase superfamily.
     
 0.467
C11orf96
AlkB homolog 3, alpha-ketoglutarate-dependent dioxygenase.
      
 0.426
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.