STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MKN0_LEPOCUncharacterized protein. (555 aa)    
Predicted Functional Partners:
ccdc151
Coiled-coil domain containing 151.
   
 0.754
armc4
Armadillo repeat containing 4.
   
 
 0.739
W5N4I5_LEPOC
Tetratricopeptide repeat domain 25.
   
 
 0.739
ribc2
RIB43A domain with coiled-coils 2.
   
 
 0.695
efcab1
EF-hand calcium binding domain 1.
    
 
 0.667
LOC102686996
Cilia and flagella associated protein 126.
   
 
 0.639
cfap52
Cilia and flagella associated protein 52.
   
 
 0.638
cfap53
Cilia and flagella associated protein 53.
   
 
 0.627
mns1
Meiosis-specific nuclear structural 1.
    
 
 0.623
cfap45
Cilia and flagella associated protein 45.
   
 
 0.621
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.