STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stag1Stromal antigen 1a. (1275 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.983
W5NKF9_LEPOC
Structural maintenance of chromosomes protein.
   
 0.967
W5M661_LEPOC
RAD21 cohesin complex component a.
   
 0.964
W5MFP6_LEPOC
RAD21 cohesin complex component like 1.
   
 0.964
W5N4U2_LEPOC
Nipped-B protein.
   
 0.959
W5NCA9_LEPOC
SMC_N domain-containing protein.
   
 0.948
W5NCB3_LEPOC
Uncharacterized protein.
   
 0.948
W5NCB6_LEPOC
SMC_N domain-containing protein.
   
 0.936
W5NCB0_LEPOC
Uncharacterized protein.
   
 0.928
W5MNQ8_LEPOC
PDS5 cohesin associated factor B.
   
 0.917
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.