STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhsNance-Horan syndrome a (congenital cataracts and dental anomalies). (1580 aa)    
Predicted Functional Partners:
abi1
Abl interactor 1.
    
  0.662
W5M175_LEPOC
Mindbomb E3 ubiquitin protein ligase 1.
   
 0.638
mpp7
Membrane protein, palmitoylated 7a (MAGUK p55 subfamily member 7); Belongs to the MAGUK family.
    
  0.636
epha2
Eph receptor A2 b.
    
  0.636
mpp3
Membrane protein, palmitoylated 3b (MAGUK p55 subfamily member 3); Belongs to the MAGUK family.
    
  0.636
BRK1
BRICK1 subunit of SCAR/WAVE actin nucleating complex.
    
  0.633
NCKAP1L
NCK associated protein 1 like.
    
  0.629
nckap1
NCK-associated protein 1.
    
  0.629
RAI2
Retinoic acid induced 2.
    
 0.628
cdc42
Cell division cycle 42.
    
  0.622
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.