STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MM60_LEPOCSodium channel modifier 1. (248 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.915
sf3b3
Splicing factor 3b, subunit 3.
    
   0.910
sf3b1
Splicing factor 3b, subunit 1.
    
   0.906
rnf113a
Ring finger protein 113A.
   
   0.896
LOC107076440
PSP domain-containing protein.
    
   0.893
prpf8
Pre-mRNA processing factor 8.
    
   0.893
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.893
sf3b6
Splicing factor 3b, subunit 6.
    
   0.856
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.735
rbm48
RNA binding motif protein 48.
    
 
 0.729
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.