STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf1Membrane-associated ring finger (C3HC4) 1. (523 aa)    
Predicted Functional Partners:
cnot2
CCR4-NOT transcription complex, subunit 2.
    
 
 0.684
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.520
ubxn8
UBX domain protein 8.
    
 
 0.520
faf2
Fas associated factor family member 2.
    
 
 0.520
SPATA5
Spermatogenesis associated 5.
    
 
 0.425
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.425
LOC102686545
Zgc:136908; Belongs to the AAA ATPase family.
    
 
 0.425
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.425
vhl
Von Hippel-Lindau tumor suppressor.
   
 
  0.423
LOC102690813
Von Hippel-Lindau tumor suppressor like.
   
 
  0.423
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.