ctbp2 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ctbp2

C-terminal binding protein 2a. (1027 aa)

Predicted Functional Partners:

psat1

0.968

hdac1

0.919

HDAC2

0.919

tcf7l2

0.912

rbpjl

0.891

rbpj

0.891

W5MVZ9_LEPOC

0.889

lef1

0.888

tcf7l1

0.888

agxt

0.855

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HDAC2	W5MVZ9_LEPOC	ENSLOCP00000020985	ENSLOCP00000012558	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transcription factor 7.	0.694
HDAC2	ctbp2	ENSLOCP00000020985	ENSLOCP00000009690	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	C-terminal binding protein 2a.	0.919
HDAC2	hdac1	ENSLOCP00000020985	ENSLOCP00000002993	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.857
HDAC2	lef1	ENSLOCP00000020985	ENSLOCP00000015111	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Lymphoid enhancer-binding factor 1.	0.743
HDAC2	rbpj	ENSLOCP00000020985	ENSLOCP00000011883	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Recombination signal binding protein for immunoglobulin kappa J region b.	0.917
HDAC2	rbpjl	ENSLOCP00000020985	ENSLOCP00000009272	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Recombination signal binding protein for immunoglobulin kappa J region-like.	0.909
HDAC2	tcf7l1	ENSLOCP00000020985	ENSLOCP00000018547	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transcription factor 7 like 1b.	0.642
HDAC2	tcf7l2	ENSLOCP00000020985	ENSLOCP00000015029	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Transcription factor 7 like 2.	0.642
W5MVZ9_LEPOC	HDAC2	ENSLOCP00000012558	ENSLOCP00000020985	Transcription factor 7.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.694
W5MVZ9_LEPOC	ctbp2	ENSLOCP00000012558	ENSLOCP00000009690	Transcription factor 7.	C-terminal binding protein 2a.	0.889
W5MVZ9_LEPOC	hdac1	ENSLOCP00000012558	ENSLOCP00000002993	Transcription factor 7.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.694
W5MVZ9_LEPOC	lef1	ENSLOCP00000012558	ENSLOCP00000015111	Transcription factor 7.	Lymphoid enhancer-binding factor 1.	0.961
W5MVZ9_LEPOC	tcf7l1	ENSLOCP00000012558	ENSLOCP00000018547	Transcription factor 7.	Transcription factor 7 like 1b.	0.921
W5MVZ9_LEPOC	tcf7l2	ENSLOCP00000012558	ENSLOCP00000015029	Transcription factor 7.	Transcription factor 7 like 2.	0.902
agxt	ctbp2	ENSLOCP00000007880	ENSLOCP00000009690	Serine--pyruvate aminotransferase.	C-terminal binding protein 2a.	0.855
agxt	psat1	ENSLOCP00000007880	ENSLOCP00000012083	Serine--pyruvate aminotransferase.	Phosphoserine aminotransferase.	0.946
ctbp2	HDAC2	ENSLOCP00000009690	ENSLOCP00000020985	C-terminal binding protein 2a.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.919
ctbp2	W5MVZ9_LEPOC	ENSLOCP00000009690	ENSLOCP00000012558	C-terminal binding protein 2a.	Transcription factor 7.	0.889
ctbp2	agxt	ENSLOCP00000009690	ENSLOCP00000007880	C-terminal binding protein 2a.	Serine--pyruvate aminotransferase.	0.855
ctbp2	hdac1	ENSLOCP00000009690	ENSLOCP00000002993	C-terminal binding protein 2a.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.919