STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (524 aa)    
Predicted Functional Partners:
LOC102683235
Synaptonemal complex protein 3.
   
 
 0.959
clg8h3orf20
FAM194 domain-containing protein.
   
   0.896
l3hypdh
Trans-L-3-hydroxyproline dehydratase.
    
  0.861
CRYM
Crystallin mu.
    
  0.856
PYCR1
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
     
 0.784
TSR1
TSR1 ribosome maturation factor.
   
    0.684
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.628
polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.620
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
  
   0.618
abcf2
ATP-binding cassette, sub-family F (GCN20), member 2b.
  
   0.606
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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