STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDGFHeparin binding growth factor. (248 aa)    
Predicted Functional Partners:
cdk13
Cyclin-dependent kinase 13.
    
 
 0.664
W5N4Z4_LEPOC
Cyclin-dependent kinase 12.
    
 
 0.664
ccnt2
Cyclin T2a; Belongs to the cyclin family.
   
 
 0.571
ccnt1
Cyclin T1; Belongs to the cyclin family.
   
 
 0.571
ccnk
Cyclin K; Belongs to the cyclin family.
   
 
 0.571
ccnq
Cyclin Q; Belongs to the cyclin family.
   
 
 0.571
ptn
Pleiotrophin.
   
  
 0.554
W5M5R8_LEPOC
X-box binding protein 1.
    
  0.509
W5N908_LEPOC
Aly/REF export factor.
   
   0.416
eif3b
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
    0.407
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.