W5MN38_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5MN38_LEPOC

Rho-GAP domain-containing protein. (473 aa)

Predicted Functional Partners:

W5MN55_LEPOC

0.917

rnd3

0.541

rnd1

0.541

rhoc

0.541

LOC102682211

0.541

W5NAW2_LEPOC

0.541

rhob

0.541

rhof

0.539

cdc42

0.523

LOC102698253

0.523

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102682211	LOC102698253	ENSLOCP00000017610	ENSLOCP00000008990	Ras homolog gene family, member Ab.	Cell division cycle 42, like.	0.715
LOC102682211	W5MN38_LEPOC	ENSLOCP00000017610	ENSLOCP00000009797	Ras homolog gene family, member Ab.	Rho-GAP domain-containing protein.	0.541
LOC102682211	W5MN55_LEPOC	ENSLOCP00000017610	ENSLOCP00000009814	Ras homolog gene family, member Ab.	Uncharacterized protein.	0.541
LOC102682211	cdc42	ENSLOCP00000017610	ENSLOCP00000001212	Ras homolog gene family, member Ab.	Cell division cycle 42.	0.789
LOC102682211	rhof	ENSLOCP00000017610	ENSLOCP00000006224	Ras homolog gene family, member Ab.	Ras homolog family member F.	0.547
LOC102682211	rnd1	ENSLOCP00000017610	ENSLOCP00000008942	Ras homolog gene family, member Ab.	Rho family GTPase 1a.	0.524
LOC102682211	rnd3	ENSLOCP00000017610	ENSLOCP00000001797	Ras homolog gene family, member Ab.	Rho family GTPase 3b.	0.521
LOC102698253	LOC102682211	ENSLOCP00000008990	ENSLOCP00000017610	Cell division cycle 42, like.	Ras homolog gene family, member Ab.	0.715
LOC102698253	W5MN38_LEPOC	ENSLOCP00000008990	ENSLOCP00000009797	Cell division cycle 42, like.	Rho-GAP domain-containing protein.	0.523
LOC102698253	W5MN55_LEPOC	ENSLOCP00000008990	ENSLOCP00000009814	Cell division cycle 42, like.	Uncharacterized protein.	0.523
LOC102698253	W5NAW2_LEPOC	ENSLOCP00000008990	ENSLOCP00000017771	Cell division cycle 42, like.	Ras homolog gene family, member Ab.	0.718
LOC102698253	cdc42	ENSLOCP00000008990	ENSLOCP00000001212	Cell division cycle 42, like.	Cell division cycle 42.	0.858
LOC102698253	rhob	ENSLOCP00000008990	ENSLOCP00000021979	Cell division cycle 42, like.	Uncharacterized protein.	0.716
LOC102698253	rhoc	ENSLOCP00000008990	ENSLOCP00000012596	Cell division cycle 42, like.	Ras homolog family member Cb.	0.715
LOC102698253	rhof	ENSLOCP00000008990	ENSLOCP00000006224	Cell division cycle 42, like.	Ras homolog family member F.	0.567
LOC102698253	rnd1	ENSLOCP00000008990	ENSLOCP00000008942	Cell division cycle 42, like.	Rho family GTPase 1a.	0.589
LOC102698253	rnd3	ENSLOCP00000008990	ENSLOCP00000001797	Cell division cycle 42, like.	Rho family GTPase 3b.	0.576
W5MN38_LEPOC	LOC102682211	ENSLOCP00000009797	ENSLOCP00000017610	Rho-GAP domain-containing protein.	Ras homolog gene family, member Ab.	0.541
W5MN38_LEPOC	LOC102698253	ENSLOCP00000009797	ENSLOCP00000008990	Rho-GAP domain-containing protein.	Cell division cycle 42, like.	0.523
W5MN38_LEPOC	W5MN55_LEPOC	ENSLOCP00000009797	ENSLOCP00000009814	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.917