STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102686767Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (279 aa)    
Predicted Functional Partners:
LOC102695473
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
   
 
 0.955
LOC102685731
Cytochrome c oxidase assembly homolog 15 (yeast).
 
  
 
 0.915
W5M7C8_LEPOC
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.883
hmox2
Heme oxygenase 2b.
     
 0.859
LOC102694440
Cytochrome c-1.
   
 
 0.748
LOC102685547
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.723
W5M3U0_LEPOC
NADH:ubiquinone oxidoreductase core subunit V2.
   
  
 0.710
mrpl35
Mitochondrial ribosomal protein L35.
   
  
 0.643
W5LZE2_LEPOC
LisH domain-containing protein.
    
 
 0.624
ndufa9
NADH:ubiquinone oxidoreductase subunit A9a.
   
 
 0.568
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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