STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102685971Uncharacterized protein. (440 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.999
rab21
RAB21, member RAS oncogene family.
   
 0.996
W5N1J9_LEPOC
Golgi-associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.986
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
   
 0.985
rps27a
Ribosomal protein S27a.
    
 0.980
LOC102691742
CHM Rab escort protein.
     
 0.979
RAB31
RAB31, member RAS oncogene family.
   
 0.978
LOC102696857
RAB5B, member RAS oncogene family.
   
 0.978
RAB17
RAB17, member RAS oncogene family.
   
 0.978
rab5a
RAB5A, member RAS oncogene family, b.
   
 0.978
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.