STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
daw1Dynein assembly factor with WDR repeat domains 1. (415 aa)    
Predicted Functional Partners:
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.957
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.951
prpf8
Pre-mRNA processing factor 8.
   
 0.950
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.945
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.945
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.936
lsm8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.933
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.930
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
  0.929
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
  0.927
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.