STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MPB9_LEPOCMINDY lysine 48 deubiquitinase 1. (548 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
   0.809
rps27a
Ribosomal protein S27a.
    
   0.769
W5MIG5_LEPOC
SET domain containing 4.
    
 0.684
setd3
Protein-histidine N-methyltransferase.
    
 0.684
mmut
Methylmalonyl CoA mutase.
    
 0.684
W5MVF4_LEPOC
Uncharacterized protein.
    
   0.657
rnf126
Ring finger protein 126.
    
  0.591
pja2
Praja ring finger ubiquitin ligase 2.
    
 0.582
RNF43
Ring finger protein 43.
    
  0.564
rnf215
Ring finger protein 215.
    
  0.564
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.