STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spartSpartin b. (595 aa)    
Predicted Functional Partners:
ist1
IST1 factor associated with ESCRT-III.
    
 
 0.943
itch
E3 ubiquitin-protein ligase.
    
 
 0.822
W5M5I9_LEPOC
E3 ubiquitin-protein ligase.
    
 
 0.682
W5MWB1_LEPOC
E3 ubiquitin-protein ligase.
    
 
 0.682
W5LZ92_LEPOC
BSCL2 lipid droplet biogenesis associated, seipin, like.
      
 0.586
W5N9M4_LEPOC
SPG11 vesicle trafficking associated, spatacsin.
      
 0.576
spg21
SPG21 abhydrolase domain containing, maspardin.
      
 0.569
W5NLD5_LEPOC
Torsin family 4, member Aa.
      
 0.557
nipa1
NIPA magnesium transporter 1.
   
  
 0.545
W5MZ27_LEPOC
Tripartite motif containing 45.
      
 0.503
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.