STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emg1EMG1 N1-specific pseudouridine methyltransferase. (244 aa)    
Predicted Functional Partners:
W5LZV8_LEPOC
UTP3 small subunit processome component.
   
 0.999
W5MCA8_LEPOC
Nucleolar protein 6.
   
 0.999
utp11
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.999
noc4l
Nucleolar complex associated 4 homolog.
   
 0.999
dcaf13
Ddb1 and cul4 associated factor 13.
   
  0.999
W5MXN1_LEPOC
FCF1 rRNA-processing protein.
   
 0.999
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.999
W5N1N1_LEPOC
Programmed cell death 11.
   
 0.999
W5NAT9_LEPOC
WD repeat domain 46.
   
 0.999
W5NDJ6_LEPOC
UTP20 small subunit processome component.
   
 0.999
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.