STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc9DnaJ (Hsp40) homolog, subfamily C, member 9. (285 aa)    
Predicted Functional Partners:
mcm2
DNA helicase; Belongs to the MCM family.
   
 
 0.919
hspa4
Heat shock protein 4b.
  
 0.718
LOC102699233
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.706
hsph1
Heat shock 105/110 protein 1.
  
 0.696
hspa4l
Heat shock protein 4 like.
  
 0.696
hspa14
Heat shock protein 14; Belongs to the heat shock protein 70 family.
  
 0.682
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
  
 0.680
W5MTQ7_LEPOC
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.672
W5N0B4_LEPOC
Uncharacterized protein; Belongs to the NDK family.
   
 
 0.672
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.668
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.